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M^'^I.W.STATE  LIBRARY 


3  0864  0015  4548  5 

BIOLOGICAL  INTEGRITY  OF 
MILL  CREEK,  PINE  CREEK,  AND  TOM  MINER  CREEK 
BASED  ON  THE  COMPOSITION  AND  STRUCTURE 
OF  THE  BENTHIC  ALGAE  COMMUNITY 


Prepared  for: 


State  of  Montana 
Department  of  Environmental  Quality 
P.O.  Box  200901 
Helena,  Montana   59620-0901 

Project  Officer:   Patrick  Newby 
Monitoring  and  Data  Management  Bureau 

DEQ  Contract  No.  200012-2 


3TATE  DOCUMENTS  COLLECTION 


Prepared  by: 

Loren  L.  Bahls,  Ph.D. 
Hannaea 
1032  Twelfth  Avenue 
Helena,  Montana   59601 


lAY  2  8  200Z 


MONTANA  STATE  LIBRARY 

1515  E.  6th  AVE. 
HELErJA,  MONTANA  59520 


November   29,    2000 


Printed  on    lOOt   Reayoled   Poa t - Con« inner   Pmpar 


SUMMARY 

In  July  and  August  2000,  composite  periphyton  samples  were 
collected  from  Mill  Creek,  Pine  Creek,  and  Tom  Miner  Creek  in  the 
Paradise  Valley  south  of  Livingston  for  the  purpose  of  assessing 
whether  these  streams  are  water-quality  limited  and  in  need  of 
TMDLs.   The  samples  were  collected  following  DEQ  standard 
operating  procedures,  processed  and  analyzed  using  standard 
methods  for  periphyton,  and  evaluated  following  modified  USEPA 
rapid  bioassessment  protocols  for  wadeable  streams. 

Mill  Creek  had  a  normal  algal  assemblage  that  indicated 
slight  nutrient  enrichment.   Diatom  association  metrics  at  the 
Mill  Creek  site  indicated  minor  impairment  but  full  support  of 
aquatic  life  uses  (Table  5) .   Slightly  elevated  percent  dominant 
species  and  siltation  indexes  and  a  few  abnormal  diatom  cells 
resulted  in  an  overall  rating  of  "good"  biological  integrity. 

The  algal  flora  in  Pine  Creek  was  sparse,  both  in  terms  of 
cell  numbers  and  taxa  richness.   The  dominant  algal  species  here 
indicated  very  cold  and  very  fast  flowing  waters,  and  very  small 
concentrations  of  nutrients.   The  moderate  stress  indicated  by 
the  algal  assemblage  here  was  probably  the  consequence  of 
naturally  austere  habitat  conditions. 

The  algal  assemblages  at  both  sites  in  Tom  Miner  Creek 
indicated  moderate  impairment  and  partial  support  of  aquatic  life 
uses.   The  leading  cause  of  this  impairment  was  siltation.   Both 
sites  also  had  somewhat  depressed  pollution  indexes,  indicating 
minor  organic  enrichment.   A  few  abnormal  diatom  cells  were  also 
found  at  each  site.   The  two  sites  on  Tom  Miner  Creek  had  nearly 
80%  of  their  diatom  assemblages  in  common,  indicating  that  they 
were  virtually  identical  in  their  chemical,  physical,  and 
biological  characteristics. 


INTRODUCTION 

This  report  evaluates  the  biological  integrity,  support  of 
aquatic  life  uses,  and  probable  causes  of  impairment  to  those 
uses  in  Mill  Creek,  Pine  Creek,  and  Tom  Miner  Creek,  which  are 
tributaries  of  the  upper  Yellowstone  River  between  Livingston  and 
Gardiner,  Montana.   The  purpose  of  this  report  is  to  provide 
information  that  will  help  the  State  of  Montana  determine  whether 
these  streams  are  water-quality  limited  and  in  need  of  TMDLs . 

The  federal  Clean  Water  Act  directs  states  to  develop  water 
pollution  control  plans  (Total  Maximum  Daily  Loads  or  TMDLs)  that 
set  limits  on  pollution  loading  to  water-quality  limited  waters. 
Water-quality  limited  waters  are  lakes  and  stream  segments  that 
do  not  meet  water-quality  standards,  that  is,  that  do  not  fully 
support  their  beneficial  uses.   The  Clean  Water  Act  and  USEPA 
regulations  require  each  state  to  (1)  identify  waters  that  are 
water-quality  limited,  (2)  prioritize  and  target  waters  for 
TMDLs,  and  (3)  develop  TMDL  plans  to  attain  and  maintain  water- _ 
quality  standards  for  all  water-quality  limited  waters. 

Evaluation  of  use  support  in  this  report  is  based  on  the 
species  composition  and  structure  of  the  periphyton  (benthic 
algae,  phytobenthos)  community  at  four  sites  that  were  sampled  in 
July  and  August  2000.   The  periphyton  community  is  a  basic 
biological  component  of  all  aquatic  ecosystems.   Periphyton 
accounts  for  much  of  the  primary  production  and  biological 
diversity  in  Montana  streams  (Bahls  et  al .  1992). 

Plafkin  et  al .  (1989)  and  Stevenson  and  Bahls  (1999)  list 

several  advantages  of  using  periphyton  in  biological  assessments: 

•    Algae  are  universally  present  in  large  numbers  in  all 

streams  and  unimpaired  periphyton  assemblages  typically 
support  a  large  number  (>30)  of  species; 


•  Algae  have  rapid  reproduction  rates  and  short  life  cycles, 
making  them  useful  indicators  of  short-term  impacts; 

•  As  primary  producers,  algae  are  most  directly  affected  by 
physical  and  chemical  factors,  such  as  temperature, 
nutrients,  dissolved  salts,  and  toxins; 

•  Sampling  is  quick,  easy  and  inexpensive,  and  causes  minimal 
damage  to  resident  biota  and  their  habitat; 

•  Standard  methods  and  criteria  exist  for  evaluating  the 
composition,  structure,  and  biomass  of  algal  associations; 

•  Identification  to  species  is  straightforward  for  the 
diatoms,  for  which  there  is  a  large  body  of  taxonomic  and 
ecological  literature; 

•  Excessive  algae  gi'owth  in  streams  is  often  correctly 
perceived  as  a  problem  by  the  public. 

•  Periphyton  and  other  biological  communities  reflect  the 
biological    integrity^   of  waterbodies;  restoring  and 
maintaining  the  biological  integrity  of  waterbodies  is  a 
goal  of  the  federal  Clean  Water  Act; 

•  Periphyton  and  other  biological  communities  integrate  the 
effects  of  different  stressors  and  provide  a  measure  of 
their  aggregate  impact;  and 

•  Periphyton  and  other  biological  communities  may  be  the  only 
practical  means  of  evaluating  impacts  from  non-point  sources 
of  pollution  where  specific  ambient  criteria  do  not  exist 
(e.g.,  impacts  that  degrade  habitat  or  increase  nutrients). 


Periphyton  is  a  diverse  assortment  of  simple  photosynthetic 
organisms  called  algae,  and  other  microorganisms  that  live 
attached  to  or  in  close  proximity  of  the  stream  bottom.   Most 
algae,  such  as  the  diatoms,  are  microscopic.   Diatoms  are 
distinguished  by  having  a  cell  wall  composed  of  opaline  glass- - 
hydrated  amorphous  silica.   Diatoms  often  carpet  a  stream  bottom 


^  Biological    integrity   is  defined  as  "the  ability  of  an 
aquatic  ecosystem  to  support  and  maintain  a  balanced,  integrated, 
adaptive  community  of  organisms  having  a  species  composition, 
diversity,  and  functional  organization  comparable  to  that  of 
natural  habitats  within  a  region"  (Karr  and  Dudley  1981) . 


with  a  slippery  brown  film. 

Some  algae,  such  as  the  filamentous  greens,  are  conspicuous 
and  their  excessive  growth  may  be  aesthetically  displeasing, 
deplete  dissolved  oxygen,  interfere  with  fishing  and  fish 
spawning,  clog  water  filters  and  irrigation  intakes,  create 
tastes  and  odors  in  drinking  water,  and  cause  other  problems. 


PROJECT  AREA  AND  SAMPLING  SITES 

The  project  area  is  located  in  southern  Park  County  in 
southcentral  Montana.   Mill  Creek  and  Pine  Creek  are  east  side 
tributaries  of  the  Yellowstone  River  that  drain  the  Absaroka 
Mountain  Range  (maximum  elevation  11,206  feet)  south  of 
Livingston.   Pine  Creek  is  a  short  (ca.  8  mi . ) ,  high  gradient 
second-order  stream  that  begins  at  Pine  Creek  Lake  in  the 
Absaroka-Beartooth  Wilderness  Area.   Much  of  the  upper  watershed 
is  unroaded.   Mill  Creek  is  a  longer  (ca.  22  mi.),  third-order 
stream  with  a  road  running  along  most  of  its  length. 

Tom  Miner  Creek  enters  the  Yellowstone  River  from  the  west 
about  16  miles  north  of  Gardiner,  Montana.   The  headwaters  of  Tom 
Miner  Creek  are  in  the  Gallatin  Range  (max.  elevation  10,992 
feet)  just  north  of  Yellowstone  National  Park.   Tom  Miner  Creek 
is  a  third  order  stream  about  15  miles  long  with  a  road  running 
parallel  to  the  stream  along  most  of  its  length. 

All  three  creeks  head  in  the  Middle  Rockies  Ecoregion  of 
North  America;  the  very  lowest  reaches  of  these  streams  pass 
through  the  Montana  Valley  and  Foothill  Prairies  Ecoregion  (Woods 
et  al .  1999)  .  The  surface  geology  of  the  watersheds  consists 
mainly  of  volcanic  rocks  of  Tertiary  age  and  undifferentiated 
metamorphic  rocks  of  Precambrian  age  (Renfro  and  Feray  1972) . 
Vegetation  is  alpine  tundra  at  the  highest  elevations,  mixed 


conifer  forest  at  intermediate  elevations,  and  mixed  grassland  at 
lower  elevations  (USDA  1976) . 

Periphyton  samples  were  collected  at  one  site  each  on  Mill 
Creek  and  Pine  Creek  in  late  July  2000  (Map  1,  Table  1) .   Both 
sites  are  located  at  an  elevation  of  about  5,500  feet.   Samples 
were  collected  at  two  sites  on  Tom  Miner  Creek  in  mid  August  2000 
(Map  2,  Table  1) .   The  elevation  of  both  sampling  sites  on  Tom 
Miner  Creek  is  about  5,000  feet. 

Mill  Creek,  Pine  Creek,  and  Tom  Miner  Creek  are  all 
classified  B-1  in  the  Montana  Surface  Water  Quality  Standards. 


METHODS 

Periphyton  samples  were  collected  by  Patrick  Newby  of  the 
MDEQ  Monitoring  and  Data  Management  Bureau  following  standard 
operating  procedures  of  the  MDEQ  Planning,  Prevention,  and 
Assistance  Division. 

Using  appropriate  tools,  microalgae  were  scraped,  brushed, 
or  sucked  from  natural  substrates  in  proportion  to  the  rank  of 
those  substrates  at  the  study  site.   Macroalgae  were  picked  by 
hand  in  proportion  to  their  abundance  at  the  site.   All 
collections  of  microalgae  and  macroalgae  were  pooled  into  a 
common  container  and  preserved  with  Lugol's  solution. 

The  samples  were  examined  to  estimate  the  relative  abundance 
and  rank  by  biovolume  of  diatoms  and  genera  of  soft  (non-diatom) 
algae  according  to  the  method  described  in  Bahls  (1993) .   Soft 
algae  were  identified  using  Dillard  (1999),  Prescott  (1978), 
Smith  (1950) ,  and  Whit ford  and  Schumacher  (1984) .   These  books 
also  served  as  references  on  the  ecology  of  the  soft  algae,  along 
with  Palmer  (1977)  . 


After  Che  identification  of  soft  algae,  the  raw  periphyton 
samples  were  cleaned  of  organic  matter  using  sulfuric  acid,  and 
permanent  diatom  slides  were  prepared  using  Naphrax,  a  high 
refractive  index  mounting  medium,  following  Standard  Methods   for 
the  Examination  of  Water  and  Wastewater    (APHA  1998) .   Between  400 
and  423  diatom  cells  (800  to  846  valves)  were  counted  at  random 
and  identified  to  species.   The  following  were  used  as  the  main 
taxonomic  and  autecological  references  for  the  diatoms:   Krammer 
and  Lange-Bertalot  1986,  1988,  1991a,  1991b;  Patrick  and  Reimer 
1966,  1975.   Lowe  (1974)  was  also  used  as  an  ecological  reference 
tor  the  diatoms. 

Tne  diatom  proportional  counts  were  used  to  generate  an 
array  of  diatom  association  metrics  (Table  2) .   A  metric  is  a 
characteristic  of  the  biota  that  changes  in  some  predictable  way 
with  increased  human  influence  (Barbour  et  al .  1999) . 

Metric  values  from  Mill  Creek,  Pine  Creek,  and  Tom  Miner 
Creek  were  compared  to  numeric  biocriteria  or  threshold  values 
developed  for  streams  in  the  Rocky  Mountain  Ecoregions  of  Montana 
(Table  3) .   These  criteria  are  based  on  metric  values  measured  in 
least- impaired  reference  streams  (Bahls  et  al .  1992)  and  on 
metric  values  measured  in  streams  that  are  known  to  be  impaired 
by  various  sources  and  causes  of  pollution  (Bahls  1993) . 

The  criteria  in  Table  3  distinguish  among  four  levels  of 
impairment  and  three  levels  of  aquatic  life  use  support:   no 
impairment  or  only  minor  impairment  (full  support);  moderate 
impairment  (partial  support) ;  and  severe  impairment  (nonsupport) . 
These  impairment  levels  correspond  to  excellent,  good,  fair,  and 
poor  biological    integrity,    respectively. 

Quality  Assurance.   Several  steps  were  taken  to  assure  that 
the  study  results  are  accurate  and  reproducible. 


Upon  receipt  of  the  samples,  station  and  sample  information 
were  recorded  in  a  laboratory  notebook  and  the  samples  were 
assigned  a  unique  number  compatible  with  the  Montana  Diatom 
Database,  e.g.,  1994-01.   The  first  part  of  this  number  (1994) 
designates  the  sampling  site  (Pine  Creek  Station  1) ;  the  second 
part  of  this  number  (01)  designates  the  number  of  periphyton 
samples  that  have  been  collected  at  this  site  to  date  for  which 
data  have  been  entered  into  the  Montana  Diatom  Database. 

Sample  observations  and  analyses  of  soft  (non-diatom)  algae 
were  recorded  in  a  lab  notebook  along  with  station  and  sample 
information  provided  by  MDEQ .   A  portion  of  the  raw  sample  was 
used  to  make  duplicate  diatom  slides.   After  completing  the 
diatom  proportional  count,  the  slide  used  for  the  count  will  be 
deposited  in  the  University  of  Montana  Herbarium  in  Missoula. 
The  other  slide  will  be  retained  by  Hannaea   in  Helena. 

On  completion  of  the  project,  station  information,  sample 
information,  and  diatom  proportional  count  data  will  be  entered 
into  the  Montana  Diatom  Database. 


RESULTS  AND  DISCUSSION 

Results  are  presented  in  Tables  4  and  5,  which  are  located 
near  the  end  of  this  report  following  the  Literature  Cited 
section.   Spreadsheets  containing  completed  diatom  proportional 
counts,  with  species'  pollution  tolerance  classes  (PTC)  and 
percent  abundances,  are  attached  as  Appendix  A. 

SAMPLE  NOTES 

Mill  Creek  Station  1.   In  addition  to  vegetative  cells,  many 
zoospores  of  Ulothrix   were  also  present. 


i 


Pine  Creek  Station  1.   This  sample  was  very  sparse.   The 
most  abundant  diatoms  were  species  of  Gomphonema . 

Tom  Miner  Creek  Station  1.   The  Cladophora   in  this  sample 
was  sparsely  branched  and  resembled  Rhizocloniwn . 

Tom  Miner  Creek  Station  2.   Mosses  dominated  this  sample. 
The  Cladophora   in  this  sample  was  sparsely  branched  and  resembled 
Rhizoclonium . 


NON-DIATOM  ALGAE 

The  periphyton  sample  from  Mill  Creek  was  dominated  by 
Ulothrix  zonata,    a  filamentous  green  alga,  and  by  diatoms; 
cyanobacteria  were  rare  (Table  4) .  Ulothrix  zonata   is  commonly 
found  in  cold,  rapidly  flowing  streams  that  are  somewhat  enriched 
with  nutrients . 

The  sample  from  Pine  Creek  contained  chrysophytes  and 
cyanobacteria,  but  no  green  algae  (Table  4) .   Only  two  genera  of 
non-diatom  algae  were  observed.   Algal  assemblages  with  few  taxa 
and  a  small  number  of  cells  are  typical  of  very  cold  mountain 
streams  with  steep  gradients  and  low  nutrient  concentrations. 
Hydrurus   foetidus ,    a  cold-water  chrysophyte,  ranked  first  in 
biovolume  and  diatoms  ranked  second;  cyanobacteria  {Phormidium 
sp.)  ranked  third  at  this  station. 

Samples  from  both  sites  on  Tom  Miner  Creek  contained  a  mix  of 
green  algae,  diatoms,  and  cyanobacteria  (Table  4) .   Diatoms  were 
the  most  abundant  algae  at  both  sites,  followed  by  the  green 
filamentous  alga  Cladophora.      In  addition,  both  sites  contained 
the  red  alga  Audouinella.      Euglena,    an  indicator  of  organic 
enrichment,  was  rare  at  the  upstream  site  (Station  1) .   The  algal 
assemblages  in  Tom  Miner  Creek  indicate  a  moderate  level  of 

8 


enrichment 


DIATOMS 


Diatom  association  metrics  at  the  Mill  Creek  site  indicated 
minor  impairment  but  full  support  of  aquatic  life  uses  (Table  5) . 
Slightly  elevated  percent  dominant  species  and  siltation  indexes 
and  a  few  abnormal  diatom  cells  resulted  in  an  overall  rating  of 
"good"  biological  integrity. 

The  diatom  association  in  Mill  Creek  was  dominated  by 
Hannaea   arcus    (Table  5) .   This  species  is  common  in  mountain 
streams  and  large  cold  lakes  in  northern  latitudes.   It  tolerates 
some  nutrient  enrichment  but  is  sensitive  to  pollution  from 
sewage.   Because  of  the  elevated  numbers  of  Hannaea   arcus   here, 
the  percent  dominant  species  index  sightly  exceeded  the  threshold 
for  minor  impairment.   Since  this  species  may  be  found  in  large 
numbers  in  relatively  pristine  waters,  its  dominance  in  Mill 
Creek  may  not  be  due  to  cultural  enrichment. 

The  sample  from  Pine  Creek  was  dominated  by  Gomphonema 
olivaceoides    (Table  5) .   This  is  a  cosmopolitan  cold  water 
species  that  often  dominates  the  diatom  assemblages  of  mountain 
streams.   In  Montana,  it  is  particularly  abundant  in  streams 
draining  the  Absaroka  and  Beartooth  Mountains  (unpublished  data) . 
Its  dominance  in  Pine  Creek,  along  with  a  small  number  of  diatom 
taxa  and  a  low  diversity  index,  probably  indicates  natural  stress 
due  to  cold  water,  fast  currents,  and  low  nutrients. 

The  siltation  index  at  both  sites  on  Tom  Miner  Creek 
indicated  moderate  impairment. and  only  partial  support  of  aquatic 
life  uses  (Table  5) .   Both  sites  supported  a  large  number  of 
diatoms  in  the  genera  Navicula   and  Nitzschia.      These  are  motile 
diatoms  that  are  adapted  to  living  on  aggrading  substrates. 


Both  sites  on  Tom  Miner  Creek  had  somewhat  depressed 
pollution  indexes  (Table  5),  indicating  minor  organic  enrichment 
A  few  abnormal  diatom  cells  were  also  found  at  each  site.   The 
two  sites  on  Tom  Miner  Creek  had  nearly  80%  of  their  diatom 
assemblages  in  common,  indicating  that  they  were  very  similar 
chemically,  physically,  and  biologically. 


LITERATURE  CITED 

APHA.   1998.   Standard  Methods  for  the  Examination  of  Water  and 
Wastewater.   20th  Edition.   American  Public  Health 
Association,  Washington,  D.C. 

Bahls,  L.L.   1979.   Benthic  diatom  diversity  as  a  measure  of 
water  quality.   Proc .  Mont.  Acad.  Sci .  38:1-6. 

Bahls,  L.L.   1993.   Periphyton  Bioassessment  Methods  for  Montana 
Streams  (Revised) .   Montana  Department  of  Health  and 
Environmental  Sciences,  Helena. 

Bahls,  L.L.,  Bob  Bukahtis,  and  Steve  Tralles.   1992.   Benchmark 

Biology  of  Montana  Reference  Streams.   Montana  Department  of 
Health  and  Environmental  Sciences,  Helena. 

Barbour,  M.T. ,  J.  Gerritsen,  B.D.  Snyder,  and  J.B.  Stribling. 

1999.   Rapid  Bioassessment  Protocols  for  Use  in  Streams  and 
Wadeable  Rivers:   Periphyton,  Benthic  Macroinvertebrates  and 
Fish.   Second  Edition.   EPA/841-B-99-002 .   U.S.  EPA,  Office 
of  Water,  Washington,  D.C. 

Dillard,  G.E.   1999.   Common  Freshwater  Algae  of  the  United 
States.   J.  Cramer,  Berlin. 

Johansen,  J.R.  1999.  Diatoms  of  Aerial  Habitats.  Chapter  12  in 
Stoermer,  E.F.,  and  J. P.  Smol  (eds.),  The  Diatoms,  Cambridge 
University  Press,  New  York. 

Karr,  J.R.,  and  D.R.  Dudley.   1981.   Ecological  perspectives  on 
water  quality  goals.   Environmental  Management  5:55-69. 

Krammer,  K.,  and  H.  Lange-Bertalot .   1986.   Bacillariophyceae, 
Part  2,  Volume  1:   Naviculaceae .  In   Ettl,  H.,  J.  Gerloff, 
H.  Heynig,  and  D.  Mollenhauer  (eds.).  Freshwater  Flora  of 
Middle  Europe.   Gustav  Fischer  Publisher,  New  York. 

10 


.)» 


Kratnmer,  K.,  and  H.  Lange-Bertalot .   1988.   Bacillariophyceae, 
Part  2,  Volume  2:   Bacillariaceae,  Epithemiaceae, 
Surirellaceae.  In   Ettl,  H.,  J.  Gerloff,  H.  Heynig,  and  D. 
Mollenhauer  (eds.),  Freshwater  Flora  of  Middle  Europe. 
Gustav  Fischer  Publisher,  New  York. 

Krammer,  K.,  and  H.  Lange-Bertalot.   1991a.   Bacillariophyceae, 
Part  2,  Volume  3:   Centrales,  Fragilariaceae,  Eunotiaceae. 
In   Ettl,  H.,  J.  Gerloff,  H.  Heynig,  and  D.  Mollenhauer 
(eds.),  Freshwater  Flora  of  Middle  Europe.   Gustav  Fischer 
Publisher,  Stuttgart. 

Krammer,  K.,  and  H.  Lange-Bertalot.   1991b.   Bacillariophyceae, 
Part  2,  Volume  4:   Achnanthaceae,  Critical  Supplement  to 
Navicula    (Lineolatae)  and  Gomphonewa ,    Complete  List  of 
Literature  for  Volumes  1-4.  In   Ettl,  H.,  G.  Gartner,  J. 
Gerloff,  H.  Heynig,  and  D.  Mollenhauer  (eds.).  Freshwater 
Flora  of  Middle  Europe.  Gustav  Fischer  Publisher,  Stuttgart. 

Lange-Bertalot,  Horst .   1979.   Pollution  tolerance  of  diatoms  as 
a  criterion  for  water  quality  estimation.   Nova  Hedwigia 
64:285-304. 

Lowe,  R.L.   1974.   Environmental  Requirements  and  Pollution 
Tolerance  of  Freshwater  Diatoms.   EPA-670/4-74-005 . 

McFarland,  B.H.,  B.H.  Hill,  andW.T.  Willingham.   1997.   Abnormal 
Fragilaria   spp .  (Bacillariophyceae)  in  streams  impacted  by 
mine  drainage.   Jour,  of  Freshwater  Ecology  12  (1)  : 141-149 . 

Palmer,  CM.   1977.   Algae  and  Water  Pollution:   An  Illustrated 
Manual  on  the  Identification,  Significance,  and  Control  of 
Algae  in  Water  Supplies  and  in  Polluted  Water. 
EPA-600/9-77-036. 

Patrick,  Ruth,  and  C.W.  Reimer.   1966.   The  Diatoms  of  The  United 
States  Exclusive  of  Alaska  and  Hawaii.   Volume  1: 
Fragilariaceae,  Eunotiaceae,  Achnanthaceae,  Naviculaceae . 
Monograph  Number  13,  The  Academy  of  Natural  Sciences, 
Philadelphia. 

Patrick,  Ruth,  and  C.W.  Reimer.   1975.   The  Diatoms  of  The  United 
States  Exclusive  of  Alaska  and  Hawaii.   Volume  2,  Part  1: 
Entomoneidaceae,  Cymbellaceae,  Gomphonemaceae, 
Epithemiaceae.   Nonograph  Number  13,  The  Academy  of  Natural 
Sciences,  Philadelphia. 

Plafkin,  J.L.,  M.T.  Barbour,  K.D.  Porter,  S.K.  Gross,  and  R.M. 
Hughes.   1989.   Rapid  Bioassessment  Protocols  for  Use  in 
Rivers  and  Streams:   Benthic  Macroinvertebrates  and  Fish. 
EPA  440-4-89-001. 


11 


Prescott,  G.W.   1978.   How  to  Know  the  Freshwater  Algae.   Third 
Edition.   Wm.  C.  Brown  Company  Publishers,  Dubuque,  Iowa. 

Renfro,  H.B.,  and  D.E.  Feray.   1972.   Geological  Highway  Map  of 

the  Northern  Rocky  Mountain  Region.   American  Association  of 
Petroleum  Geologists,  Tulsa,  Oklahoma. 

Smith,  G.M.   1950.   the  Fresh-Water  Algae  of  The  United  States. 
McGraw-Hill  Book  Company,  New  York. 

Stevenson,  R.J.,  and  L.L.  Bahls.   1999.   Periphyton  Protocols. 
Chapter  6  in   Barbour,  M.T.,  J.  Gerritsen,  B.D.  Snyder,  and 
J.B.  Stribling.   Rapid  Bioassessment  Protocols  for  Use  in 
Streams  and  Wadeable  Rivers:   Periphyton,  Benthic 
Macroinvertebrates  and  Fish.   Second  Edition.   EPA/841-B-99- 
002.   U.S.  EPA,  Office  of  Water,  Washington,  D.C. 

USDA.   1976.   Climax  Vegetation  of  Montana  (map).   U.  S. 

Department  of  Agriculture,  Soil  Conservation  Service, 
Cartographic  Unit,  Portland. 

Whitford,  L.A.,  and  G.J.  Schumacher.   1984.   A  Manual  of  Fresh- 
Water  Algae  (Revised) .   Sparks  Press,  Raleigh,  North 
Carolina. 

Whittaker,  R.H.   1952.   A  study  of  summer  foliage  insect 

communities  in  the  Great  Smoky  Mountains.   Ecological 
Monographs  22:1-44. 

Woods,  A.J.,  Omernik,  J.M.,  Nesser,  J. A.,  Shelden,  J.,  and 

Azevedo,  S.H.   1999.   Ecoregions  of  Montana  (color  poster 
with  map),  U.S.  Geological  Survey,  Reston,  Virginia. 


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Table  1.   Location  of  periphyton  stations  on  Mill  Creek,  Pine 
Creek,  and  Tom  Miner  Creek:   Station  codes,  sample 
numbers  in  the  Montana  Diatom  Database,  latitudes  and 
longitudes,  and  sample  dates.   Stations  are  listed  in 
order  from  upstream  to  downstream. 


Location 

Station 

Sample 

Latitude/ 

Sample 

Code 

Number 

Longitude 

Date 

Tom  Miner  Creek 

Station  1 

1996-01 

45 

11 

46 

08/17/00 

at  canyon  mouth 

110 

55 

07 

Tom  Miner  Creek 

Station  2 

1997-01 

45 

12 

01 

08/17/00 

at  mouth 

110 

54 

09 

Mill  Creek 

Station  1 

1995-01 

45 
110 

20 
35 

10 
13 

07/20/00 

Pine  Creek 

Station  1 

1994-01 

45 
110 

30 
31 

01 
46 

07/27/00 

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Table  4.   Relative  abundance  of  cells  and  rank  by  biovolume  of 
diatoms  and  genera  of  non-diatom  algae  in  periphyton 
samples  collected  from  Mill  Creek,  Pine  Creek,  and  Tom 
Miner  Creek  in  the  summer  of  2000. 


■  Relative  Abundance^  and  (Rank) 
Taxa         Mill  Creek    Pine  Creek      Tom  Miner  Creek 

Station  1     Station  1     Station  1   Station  2 

Chlorophyta  (green  algae) 

Cladophora  f  (2)  a  (2) 

Closterium  o  (6)  c  (3) 

Ulothrix  d(l)  f(3)  o(5) 

Euglenophyta 

Euglena  r  (7) 

Chrysophyta  (golden  algae) 

Diatoms        a(2)  o(2)         a(l)       a(l) 

Hydrurus  c  (1) 

Rhodophyta 

Audouinella  c  (5)      c  (4) 

Cyanophyta  ( cyanobacteria) ^ 
Amphithrix  r  (3) 

Anahaena  r  (4)  o  (6) 

Phormidium  o  (3)         f  (4) 


^  d  =  dominant;  a  =  abundant;  f  =  frequent;  c  =  common;  o  = 
occasional;  r  =  rare 


Formerly  known  as  blue-green  algae. 


Table  5.   Percent  abundance  of  major  diatom  species^  and  values 
of  selected  diatom  association  metrics  for  periphyton 
samples  collected  from  Mill  Creek,  Pine  Creek,  and  Tom 
Miner  Creek  in  the  summer  of  2000. 


2 


Species/Metric  Percent  Abundance/Metric  Values 

;Pollution  Tolerance  Class) ^ 

Mill  Cr.   Pine  Cr .   Tom  Miner  Cr. 

Sta.  1     Sta.  1    Sta.  1   Sta.  2 


Achnanthes  minutissirna    (3)  5.36  13.38      5.76  6.26 

CyTnjbella  silesiaca    (2)  8.60  0.25      1.32  1.06 

Fragilaria   construens    (3)  6.48  2.40  2.25 

Fragilaria   vaucheriae    (2)  3.87  12.11  10.76 

Gomphonema   angustatum    (2)  0.87  11.00      0.24  0.35 

Gomphonema   olivaceoid.es    (3)  5.49  62.25      2.40  2.72 

Hannaea   arcus    (3)  28.30  3.25      1.80  0.71 

Navicula   cryptotenella    (2)  1.50  0.50      7.31  6.50 

Nitzschia   dissipata    (3)  1.75  20.98  15.37 

Nitzschia  paleacea    (2)  7.61  5.16  1.89 

Cells  Counted  401  400  417  423 

Total  Species  52  25  65  69 

Species  Counted  47  25  54  62 

Species  Diversity  4.12  2 .08  4.50  4.80 

Percent  Dominant  Species  28 .30  62.25  20.98  15.37 

Disturbance  Index  5.36  13.38  5.76  6.26 

Pollution  Index  2.65  2.86  2 .42  2 .41 

Siltation  Index  22.44  2.25  54.93  50.50 

Percent  Abnormal  Cells  0 .62  0.00  0 . 60  0 . 59 

Percent  Epithemiaceae  0.00  0.00  0.00  0.00 

Similarity  Index                      21.84  78.86 

^  A  major  diatom  species  is  here  considered  to  be  one  that 

accounts  for  5%  or  more  of  the  cells  in  one  or  more  samples  of 
a  sample  set. 

^  Underlined  values  indicate  good  biological  integrity,  minor 

impairment,  and  full  support  of  aquatic  life  uses;  bold  values 
indicate  fair  biological  integrity,  moderate  impairment,  and 
partial  support  of  aquatic  life  uses,-  all  other  values 
indicate  excellent  biological  integrity,  no  impairment,  and 
full  support  of  aquatic  life  uses  when  compared  to  criteria 
for  mountain  streams  in  Table  3 . 

^   3  =  sensitive  to  pollution;  2  =  tolerant  of  pollution; 
1  =  most  tolerant  of  pollution. 


APPENDIX  A:   DIATOM  PROPORTIONAL  COUNTS 


r 


r 


Mill  Creek  Station  1 


11/28/00 


Sample 


Q<Miug;re»p0cie$/V|i!r«ty 


PoHution  ToSefaitce  Ctos&     Count 


P««em 


_199501Achnanthes  lanceoJata. 


J99501Achnanlhes  minulissima_ 
_1 99501. Amphora  pedicuLus^ 


199501.Cocconeis  placentula^ 
_1995Ql!cymbellaj:iymbifomnis 


iOl|Cymbella  minuta 


19950JjCymbella  siiesiaca 


1 99501  piatoma  anceps 


1 99501  Diatoma  hiemale 


JL995Q 1  Diatoma  mesodon 


199501  Diatoma  vulgaris 


jLOaSDlpragilaria  brevislriata. 


199501  Fragilaria  construens 


,19950  IjEragil  aria  JeptQStauroiL 
199501  Fragilaria  pinnata 


199501  Fragilaria  vaucheriae 


.29. 


Al. 


A&. 


_6a. 


.52. 


JU 


Jl 


JL62 


.^.35 


jiaz 


,2^4 


JL12 


JL25 


-SLfiQ 


JL12 


A25 


Am 


JLQQ 


JLfiZ 


6.48 


1  37 


AA2 


JLSZ 


199501  Gomphoneis  minuta 


0.12 


1 99501. Gomphonema  angustatum 


1 99501  iGomphonema  clevei 


DliG  omphoaema  kobayasii 


199501  Gomphonema  minutum 


2. 


AA. 


JIM 


JL12 


JLI5 


^.32 


199501  iGomphonema  olivaceoides 


AA- 


.5.49 


199501  iGomphonema  olivaceum 


JLaZ 


iOI  ^Gomphonema  parvulum 


199501|Hannaea  a  reus 

1 99501  iHantzschia  amphioxys 


.221. 


JL25 


_2a^ 


QJIQ 


199501 


Meridion  circulare 


1 99501  [Navicula  capitatoradiata 


JLjL2 


199M1  bJavicula  crypto  cfiphala_ 
1 995QltlavLcula.cryptotenella_ 
199501  [Navicula  gregaria 
199501 


JL12 


Navicula  menisculus 


Jl2_ 


JL5Q 


JL5Q 


JLQQ 


JL25 


199501 


Navicula  minima 


0.75 


199501 


Navicula  minuscula 


0.75 


1995Q1 


Navicula  novaesiberica 


_1995Q1  Navicula^  pupula_ 
J.9950U 


Navicula  reichardtiana 


JL25 


JLQQ 


0.25 


199501 


Navicula  tripunctata 


0  12 


19950HNitzschia  bacillum 


Ldissipata. 
9.95QJlNitz£chiaionticQia_ 
JL995Q.1 


Nitzschia  hantzschiana 


JL4. 


0.00 


JLZ5 


050 


0.25 


199501 


Nitzschia  inconspicua 


A&. 


JZ2A 


199501 


Nitzschia  linearis 


0.12 


199501  Nitzschia  palea 


jL99501,NitzscJiia  paleacea 


99501  [Nitzschia  perminuta 
J1995Q1 
JL995Q1 


MlzscMa4iura_ 


Reimeiia^imiata, 


199501  Rhoicosphenia  curvata 


JL995M Synedra  rumpens 
199501  Svnedra  ulna 


31 


Aft. 


-2Q. 


.25. 


JL5Q 


J131 


JLaZ 


0-62 


2.49 


3.12 


JL25 


JL251 


Page  1 


Pine  Creek  Station  1 


11/28/00 


Sample 

Genus/SpeciesA/arieiy 

Poitution  Tolefance  Ctos 

Count 

Percent 

1 99401  [Achnanthes  bioretii 

3 

4 

0.50 

199401 

Achnanthes  lanceolata 

2 

2 

0.25 

199401 

Achnanthes  minutissima 

3 

107 

13  38 

199401 

Amphora  inariensis 

3 

2 

0.25 

199401 

Amphora  pedicuius 

3 

2 

0.25 

199401 

Cocconeis  placentula 

3 

9 

1.13 

199401 

Cymbella  affmis 

3 

3 

0.38 

199401 

Cymbella  cymbiformis 

3 

2 

0.25 

199401 

Cymbella  minuta 

2 

2 

0.25 

199401 

Cvmbella  silesiaca 

2 

2 

0.25 

199401 

Diatoma  hiemale 

3 

2 

0.25 

199401 

Diatoma  mesodon 

3 

8 

1.00 

199401 

Fragilaria  leptostauron 

3 

2 

0.25 

199401 

Gomphonema  angustatum 

2 

88 

11.00 

199401 

Gomphonema  kobayasii 

3 

6 

0.75 

199401 

Gomphonema  minutum 

3 

2 

0.25 

199401 

Gomphonema  olivaceoides 

3 

498 

62.25 

199401 

Gomphonema  parvulum 

1 

7 

0.88 

199401 

Gomphonema  subtile 

3 

4 

0.50 

199401 

Hannaea  arcus 

3 

26 

3.25 

199401 

Meridion  circulare 

3 

4 

0.50 

199401 

Navicula  cryptotenella 

2 

4 

0.50 

199401 

Navicula  radiosa 

3 

2 

0.25 

199401 

Navicula  sp. 

2 

2 

0.25 

199401 

Reimeria  sinuata 

3 

10 

1.25 

Page  1 


Tom  Miner  Creek  Station  1 


11/28/00 


Sample   [         Genua/SpeclesAAariety 

Pollution  Tolerance  CfaBS 

Count 

Percent 

1 99601  Achnanthes  lanceolata 

2 

25 

3.00 

199601  Achnanthes  lapidosa 

3 

0 

0.00 

199601  [Achnanthes  minutissima 

3 

48 

5.76 

199601 

Amphora  inariensis 

3 

0 

0.00 

199601 

Aulacoseira  crenulata 

3 

1 

0.12 

199601 

Cocconeis  pediculus 

3 

1 

0.12 

199601 

Cocconeis  placentula 

3 

15 

1.80 

199601 

Cymbella  silesiaca 

2 

11 

1.32 

199601 

Diatoma  mesodon 

3 

2 

0.24 

199601 

Diploneis  oblongeila 

3 

1 

0.12 

199601 

Eunotia  sp. 

3 

11 

1.32 

199601 

Fragilaria  capucina 

2 

18 

2.16 

199601 

Fragilaria  construens 

3 

20 

2.40 

199601 

Fragilaria  lapponica 

3 

1 

0.12 

199601 

Fragilaria  leptostauron 

3 

1 

0.12 

199601 

Fragilaria  pinnata 

3 

0 

0.00 

199601 

Fragilaria  vaucheriae 

2 

101 

12.11 

199601 

Frustulia  vulgaris 

2 

0 

0.00 

199601 

Gomphoneis  eriense 

3 

7 

0.84 

199601 

Gomphoneis  minuta 

3 

2 

0.24 

199601 

Gomphonema  angustatum 

2 

2 

0.24 

199601 

Gomphonema  minutiforme 

3 

6 

0.72 

199601 

Gomphonema  minutum 

3 

4 

0.48 

199601  Gomphonema  olivaceoides 

3 

20 

2.40 

199601  Gomphonema  olivaceum 

3 

0 

0.00 

199601 

Gomphonema  parvulum 

1 

3 

0.36 

199601 

Hannaea  arcus 

3 

15 

1.80 

199601 

Melosira  varians 

2 

17 

2.04 

199601 

Meridion  circulare 

3 

1 

0.12 

199601 

Navicula  acceptata 

2 

4 

0.48 

199601 

Navicula  capitatoradiata 

2 

12 

1.44 

199601 

Navicula  contenta 

2 

5 

0.60 

199601 

Navicula  cryptocephala 

3 

2 

0.24 

199601 

Navicula  cryptotenella 

2 

61 

7.31 

199601 

Navicula  exigua 

2 

2 

0.24 

199601 

Navicula  exilis 

2 

1 

0.12 

199601 

Navicula  gregaria 

2 

1 

0.12 

199601 

Navicula  lanceolata 

2 

4 

0.48 

199601 

Navicula  libonensis 

2 

0 

0.00 

199601 

Navicula  menisculus 

2 

5 

0.60 

199601 

Navicula  minima 

1 

15 

1.80 

199601 

Navicula  minuscula 

1 

2 

0.24 

199601 

Navicula  novaesiberica 

2 

0 

0.00 

199601 

Navicula  sp. 

2 

3 

0.36 

199601 

Navicula  tripunctata 

3 

12 

1.44 

199601 

Nitzschia  archibaldii 

2 

4 

0.48 

199601 

Nitzschia  bacillum 

3 

1 

0.12 

Page  1 


Tom  Miner  Creek  Station  1 


11/28/00 


Sample 

Oenus/Sp6<bieafVteiiet¥ 

:;ll0llUti0l!fe:lGli&M^ 

;.::.;;eQil*li:::::: 

,v..:vP^ent„:„„ 

199601  Nitzschia  dissipata 

3 

175 

20.98 

199601 

Nitzschia  fonticola 

3 

7 

0.84 

199601 

Nitzschia  frustulum 

2 

4 

0.48 

199601 

Nitzschia  gracilis 

2 

0 

0.00 

199601 

Nitzschia  heufleriana 

3 

0 

0.00 

199601 

Nitzschia  inconspicua 

2 

27 

3.24 

199601 

Nitzschia  linearis 

2 

26 

3.12 

199601 

Nitzschia  palea 

1 

22 

2.64 

199601 

Nitzschia  paleacea 

2 

43 

5.16 

199601 

Nitzschia  perminuta 

3 

5 

0.60 

199601 

Pinnularia  borealis 

2 

0 

0.00 

199601 

Reimeria  sinuata 

3 

5 

0.60 

199601 

Rhoicosphenia  curvata 

3 

33 

3.96 

199601 

Rhopalodia  gibba 

2 

0 

0.00 

199601 

Surirelia  minuta 

2 

10 

1.20 

199601 

Synedra  parasitica 

2 

2 

0.24 

199601 

Synedra  rumpens 

2 

4 

0.48 

199601 

Synedra  ulna 

2 

4 

0.48 

Page  2 


Tom  Miner  Creek  Station  2 


11/28/00 


Sample 

Genus/SpeciesA/ariettf 

Pollution  Toierance  Cktss 

Count 

Percetrt 

1 99701  y^chnanthes  lanceolata 

2 

32 

3.78 

199701  Achnanthes  lapidosa 

3 

2 

0.24 

1 99701, Achnanthes  minutissima 

3 

53 

6.26 

199701 

Annphora  pediculus 

3 

5 

0.59 

199701 

Auiacoseira  italica 

3 

5 

0.59 

199701 

Cocconeis  pediculus 

3 

33 

3.90 

199701 

Cocconeis  placentula 

3 

15 

1.77 

199701 

Cymbella  silesiaca 

2 

9 

1.06 

199701 

Diatoma  hiemale 

3 

3 

0.35 

199701 

Diatoma  mesodon 

3 

3 

0.35 

199701 

Fragilaria  capucina 

2 

22 

2.60 

199701 

Fragilaria  construens 

3 

19 

2.25 

199701 

Fragilaria  lapponica 

3 

0 

0.00 

199701 

Fragilaria  leptostauron 

3 

1 

0.12 

199701  Fragilaria  pinnata 

3 

2 

0.24 

199701  Fragilaria  vaucheriae 

2 

91 

10.76 

199701 

Frustulia  vulgaris 

2 

0 

0.00 

199701 

Gomphoneis  eriense 

3 

10 

1.18 

199701 

Gomphoneis  minuta 

3 

2 

0.24 

199701 

Gomphonema  angustatum 

2 

3 

0.35 

199701  Gomphonema  kobayasii 

3 

12 

1.42 

199701  Gomphonema  minutiforme 

3 

2 

0.24 

199701 

Gomphonema  minutum 

3 

4 

0.47 

199701 

Gomphonema  olivaceoides 

3 

23 

2.72 

199701 

Gomphonema  parvulum 

1 

3 

0.35 

199701 

Gomphonema  pumilum 

3 

4 

0.47 

199701 

Hannaea  arcus 

3 

6 

0.71 

199701 

Melosira  varians 

2 

25 

2.96 

199701 

Meridion  circulare 

3 

1 

0.12 

199701  Navicula  accomoda 

1 

0 

0.00 

199701  Navicula  capitatoradiata 

2 

20 

2.36 

199701 

Navicula  caterva 

2 

2 

0.24 

199701 

Navicula  cincta 

1 

0 

0.00 

199701 

Navicula  cryptocephala 

3 

1 

0.12 

199701 

Navicula  cryptotenella 

2 

55 

6.50 

199701 

Navicula  lanceolata 

2 

3 

0.35 

199701 

Navicula  libonensis 

2 

1 

0.12 

199701 

Navicula  menisculus 

2 

8 

0.95 

199701 

Navicula  minima 

1 

8 

0.95 

199701 

Navicula  minuscula 

1 

5 

0.59 

199701 

Navicula  mutica 

2 

2 

0.24 

199701 

Navicula  novaesiberica 

2 

2 

0.24 

199701 

Navicula  pelliculosa 

1 

6 

0.71 

199701 

Navicula  reichardtiana 

2 

2 

0.24 

199701 

Navicula  sp. 

2 

0 

0.00 

199701 

Navicula  tripunctata 

3 

13 

1.54 

199701 

Navicula  veneta 

1 

1 

0.12 

Page  1 


Tom  Miner  Creek  Station  2 


11/28/00 


Sample 

Genus/SpeciesA/^ariety 

PolCtition  Tolerance  Class 

Count 

Percent 

199701  Nitzschia  alpina 

3 

3 

0.35 

199701 

Nitzschia  archibaidii 

2 

1 

0.12 

199701 

Nitzschia  dissipata 

3 

130 

15.37 

199701 

Nitzschia  fonticola 

3 

7 

0.83 

199701 

Nitzschia  heufleriana 

3 

4 

0.47 

199701 

Nitzschia  incognita 

2 

0 

0.00 

199701 

Nitzschia  inconspicua 

2 

35 

4.14 

199701 

Nitzschia  lacuum 

3 

2 

0.24 

199701 

Nitzschia  linearis 

2 

4^ 

4.96 

199701 

Nitzschia  palea 

1 

28 

3.31 

199701 

Nitzschia  paieacea 

2 

16 

1.89 

199701 

Nitzschia  perminuta 

3 

1 

0.12 

199701 

Pinnularia  sp. 

3 

1 

0.12 

199701 

Reimeria  sinuata 

3 

12 

1.42 

199701 

Rhoicosphenia  curvata 

3 

24 

2.84 

199701 

Rhopalodia  gibba 

2 

0 

0.00 

199701 

Simonsenia  delognei 

2 

1 

0.12 

199701 

Surirella  angusta 

1 

2 

0.24 

199701 

Surirelia  linearis 

3 

1 

0.12 

199701 

Surirella  minuta 

2 

14 

1.65 

199701 

Synedra  rumpens 

2 

'  2 

0.24 

199701 

Synedra  ulna 

2 

1 

0.12 

Page  2 


• 


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